Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs35970884 chr7:46234824 C/T 6.55E-5 110 15.17 13.73 0 KM Plot
LAML rs36000555 chr17:28629076 A/G 0.000116 111 19.82 15.7 6.1 KM Plot
LAML rs36048853 chr17:28634301 C/T 0.000115 110 19.82 16.17 6.1 KM Plot
LAML rs36052726 chr12:48853790 C/T 0.000126 111 16.23 10.13 0 KM Plot
LAML rs369006764 chr4:16033773 CT/CTTT 0.000109 110 15.2 16.3 0 KM Plot
LAML rs371624457 chr17:30419960 G/C 4.34E-5 111 14.67 15.23 0.52 KM Plot
LAML rs371700322 chr2:108514597 T/G 0.000151 107 0 27.4 13.2 KM Plot
LAML rs372189 chr17:39331971 G/A 0.000153 111 0 20.25 13.15 KM Plot
LAML rs3742669 chr14:90767746 C/A 3.36E-5 108 1.03 21.87 13.2 KM Plot
LAML rs374352414 chr17:30422382 G/C 7.68E-5 107 12.63 16.17 0.52 KM Plot
LAML rs3745313 chr19:16243416 C/T 8.37E-5 109 16.23 7.13 0 KM Plot
LAML rs3745314 chr19:16243590 A/C 8.37E-5 109 16.23 7.13 0 KM Plot
LAML rs3745754 chr19:48253579 A/G 2.65E-7 108 5.1 22.37 14.18 KM Plot
LAML rs3746674 chr20:4764629 A/G 0.000168 111 1.5 15.23 15.7 KM Plot
LAML rs374720054 chr13:71361755 GAAAAA/G 2.85E-5 107 0 5 16.3 KM Plot